PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0417s0210.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 363aa    MW: 40563.6 Da    PI: 5.609
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0417s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.5e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT eEd  l+ +++++G+g+W++ ++  g+ R++k+c++rw +yl
  SapurV1A.0417s0210.1.p 14 KGPWTSEEDHELISYIQLHGPGNWRSLPKNAGLQRCGKSCRLRWTNYL 61
                            79********************************************97 PP
2Myb_DNA-binding48.42.1e-1567111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rgr++ +E+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  SapurV1A.0417s0210.1.p  67 RGRFSFDEEETIIQLHCVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                             89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-25564IPR009057Homeodomain-like
PROSITE profilePS5129424.65965IPR017930Myb domain
SuperFamilySSF466891.57E-2911108IPR009057Homeodomain-like
SMARTSM007174.5E-121363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
CDDcd001671.74E-101661No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129418.44766116IPR017930Myb domain
SMARTSM007171.1E-1366114IPR001005SANT/Myb domain
PfamPF002498.4E-1467111IPR001005SANT/Myb domain
CDDcd001672.93E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGRTPCCDKN GLKKGPWTSE EDHELISYIQ LHGPGNWRSL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFDEEETIIQ LHCVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRNG  120
IDPVTHAPRL DLLDLSSILT SALCNPSTLL NLSTLVGSTQ ALLNPDILRL ATTLSSLKQE  180
NSDMFLQQLQ ENQLLNSLLQ IQDVPALSSH PSQFQNLVHQ VPVCSTSAVP FINHTAQIMQ  240
ENVKGFFSNP TSTFSCQNSQ ENFVPSSLNE ILVSLPNFYC NSTTTTDPKV PEPGEYSGFQ  300
SANNGYQNFS IDSVMSTPLM SQDPLNSSST YVNSSSTEDE RECYSSLLKF EIPESLDIDD  360
FL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-30121162105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-30121162105C-Myb DNA-Binding Domain
1msf_C3e-30121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0417s0210.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817921e-36LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132551e-36LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371644.10.0transcription factor MYB41
SwissprotQ9LDR81e-105MY102_ARATH; Transcription factor MYB102
TrEMBLU5FHR20.0U5FHR2_POPTR; Uncharacterized protein
STRINGPOPTR_0019s14070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-93MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]