PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0420s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 269aa    MW: 31044.1 Da    PI: 9.1615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0420s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-05102125123
                             EEETTTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                             +kC++C+ksF+   +L +H  + H
  SapurV1A.0420s0040.1.p 102 WKCGYCKKSFRAEKYLDQHFDNrH 125
                             58*****************77666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.642102125IPR007087Zinc finger, C2H2
PROSITE patternPS000280104125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGKASKITLI LLLVSLLFKQ ILSQDVGEHV AARTVKQEEE HGHKVHCSRE RSRAAWQAIE  60
EYLMPFVERE RYQILSKCRL HPSNDLFRDQ EEHKIHVDIN EWKCGYCKKS FRAEKYLDQH  120
FDNRHYNLLN ISDSKCLADL CGALHCDFMM DSKSTKTKCN PAAVAKNRHL CESLADSCFP  180
LSQGPSASRL HELFLHQFCD AHTCSGKRKL FPKGGKKETS VFYLAISILT MMMIPLFYLI  240
VYLHQSEMRK GTQELRRIPK VGRKTKPM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0420s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024088.10.0PREDICTED: uncharacterized protein LOC105125376
RefseqXP_011024089.10.0PREDICTED: uncharacterized protein LOC105125376
TrEMBLB9IF520.0B9IF52_POPTR; Uncharacterized protein
STRINGPOPTR_0015s10200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32161319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-126C2H2-like zinc finger protein