PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0423s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 255aa    MW: 28048 Da    PI: 7.2194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0423s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-134188455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                            +h   Er RR+++++ f+ L  llP++      K +K++i+ +A++YI  Lq
  SapurV1A.0423s0120.1.p 41 MHIWTERERRKKMRDMFSSLHALLPQL----PAKADKSSIVDEAIKYIETLQ 88
                            67778*********************6....39*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-163598IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.25E-143692No hitNo description
PROSITE profilePS5088814.3423787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-154099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-104188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-104593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.91E-5173248No hitNo description
CDDcd048731.27E-4177211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
METQIPAATV VRGQKRCRKG GDARNKKVVN GGGSGESEHE MHIWTERERR KKMRDMFSSL  60
HALLPQLPAK ADKSSIVDEA IKYIETLQET LQTLQKQKVE KFQGAIIDHE PSELLITSLT  120
DTVGSREASL AALGPSKNFP LTSKMSQNSF SVSLSPACFQ TWFSPNVVMN MCGGDAQFSV  180
CSIRKPGLLA TILYILEKHN LDVVSAHISS DQYRSIYLIH AHADGASDQY PVAMSVEDTF  240
NLAAGEMNLW VMSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0423s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374909.11e-162transcription factor bHLH95 isoform X2
TrEMBLB9MVT41e-161B9MVT4_POPTR; Uncharacterized protein
STRINGPOPTR_0014s02600.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-40bHLH family protein