PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0423s0170.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

WOX

Protein Properties

Length: 217aa MW: 24936 Da PI: 9.164

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0423s0170.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.7	6.3e-21	78	137	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l+++ r+p+ +++e+++++l +++ ++V++WFqN++a+e++ SapurV1A.0423s0170.1.p 78 TRWNPTQEQIGILEMLYRRgMRTPNGQQIEDITAQLsrygKIEGKNVFYWFQNHKARERQ 137 7***************99************************************97 PP
2	Wus_type_Homeobox	117	8.6e-38	78	139	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly++G+rtPn ++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq SapurV1A.0423s0170.1.p 78 TRWNPTQEQIGILEMLYRRGMRTPNGQQIEDITAQLSRYGKIEGKNVFYWFQNHKARERQKQ 139 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.22	73	138	IPR001356	Homeobox domain
SMART	SM00389	5.5E-7	75	142	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.97E-12	75	144	IPR009057	Homeodomain-like
Pfam	PF00046	1.3E-18	78	137	IPR001356	Homeobox domain
CDD	cd00086	4.61E-5	78	139	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.2E-8	79	137	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0007165	Biological Process	signal transduction
GO:0010067	Biological Process	procambium histogenesis
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MGSMKVHQLA RGFWEHDPAL TLGCKRLRPL APKLASTDHS VASFDLKSFI RPDSGPRKLA 60 SSDEKKDSPQ GETHPGGTRW NPTQEQIGIL EMLYRRGMRT PNGQQIEDIT AQLSRYGKIE 120 GKNVFYWFQN HKARERQKQK RNSLGLSHSP RTPSPITLIS LDTTRGEVEK DEDSPYKRKC 180 RSWSFECFEL EESRSWRDEE EGDRTLELFP LHPEGR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0423s0170.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF145702	0.0	EF145702.1 Populus trichocarpa clone WS0112_M11 unknown mRNA.
GenBank	KC691250	0.0	KC691250.1 Populus x canadensis WUSCHEL-related homeobox 4 (WOX4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006374903.1	1e-148	WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	3e-73	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	B9MVU1	1e-147	B9MVU1_POPTR; WOX family protein
TrEMBL	R9RIF3	1e-147	R9RIF3_POPCA; WUSCHEL-related homeobox 4
STRING	POPTR_0014s02540.1	1e-148	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6132	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	1e-75	WUSCHEL related homeobox 4

Link Out ? help Back to Top
Phytozome	SapurV1A.0423s0170.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]