PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0424s0110.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 1015aa MW: 113960 Da PI: 9.5352

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0424s0110.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.9e-07	5	41	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W + E e++++a + G++ Wk++a+++ +R+ +++ SapurV1A.0424s0110.1.p 5 QWKKAELERFYKAYRDNGKN-WKKVAAEVR-NRSVEMVE 41 6***************99.*****.*99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.569	1	54	IPR017884	SANT domain
SMART	SM00717	0.0081	2	50	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.88E-7	4	49	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-5	5	45	IPR001005	SANT/Myb domain
CDD	cd00167	6.15E-4	6	40	No hit	No description
SMART	SM01135	5.8E-55	614	718	IPR033471	DIRP domain
Pfam	PF06584	3.1E-30	614	717	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1015 aa Download sequence Send to blast
MLGPQWKKAE LERFYKAYRD NGKNWKKVAA EVRNRSVEMV EALYNMNRAY LSLPEGTASV 60 VGLIAMMIDH YSVLEASDSE RESNEIPGVP RKLQKRKRPK VLLSASKEDP LHSSMKEDLV 120 IYFAYGKHNS SCFQFSLSPL CYDLRSTRTC FPVSGLQLAC IRWLMQSSCR CRPLHAVGKR 180 TPRFPVSYLR KKEDGENYVS PKKKRRKSEI NANEHSAVLA LTEALQRVDS PQMSQTPRRR 240 TENMKSSPVQ SWDRMSESSP ANLRDAFINE NWSESGIGCG GADLASVRDA SSLAELEGIG 300 TVEVHKKGKK FYGNKIRVEK NGNSQSDDGG EACSGTEEEQ KFSTLKGKVE IEMPNAKIDE 360 TSHWGQRKRS KKKFSDDEPA DLIGLQTLAL VSAMEFESSS LLDDERTTQT GDEKSSVPES 420 ASTSHHRDKI KLSRQKEKAT SGVEGTTSRK PKRQRYPLSS AKSVPEANKQ PQPISSDMLK 480 RKHEAVVAKV LDEEENTSVI KGKRSAQISS PSKQLKSSKL PDGSFSADQK TIANNLAKST 540 EQVPVASQVI LSTRKTSRRK MDLKRAMIPK VNVLKNQTSK YTISLQDGAT HIKDKLSCIL 600 SSPMVRRWCA FEWFYSAVDY PWFARREFVE YLNHVGLGHI PRLTRVEWGV IRRHVFSLGK 660 PRRFSERFLH EEREKLQQYR ESVRKHYMEL RTGLREGLPT DLARPISVGQ RVIAIHPKTR 720 ELHDGSVLTV DHDRCRVQFD SAELGVEFVK DIDCMPSNPL DNMPEALRRQ KISVLPKELL 780 VNGKPHIGEF TAIEKLRNAQ NPMNALMKQV QVEANHANLL AKATSTDIVN AQGAFSHPSR 840 VSHIELKEYD IRALSELNHA LDKKAISSMK EGEDAFARIG EALDSVDRSH SVSESRTQMI 900 RSQEEANTGP CHQNQLIPST PEPQVNSSVS GPQSNDSEKN ETAIPSELIS SCVAALLMIQ 960 TCTERQYPPA DVAQIIDSAV TSLHPCCPQN LPIYREIQMC MGRIKTQILA LIPT*

Sequence ? help Back to Top

Protein Sequence Length: 1015 aa Download sequence Send to blast

MLGPQWKKAE LERFYKAYRD NGKNWKKVAA EVRNRSVEMV EALYNMNRAY LSLPEGTASV  60
VGLIAMMIDH YSVLEASDSE RESNEIPGVP RKLQKRKRPK VLLSASKEDP LHSSMKEDLV  120
IYFAYGKHNS SCFQFSLSPL CYDLRSTRTC FPVSGLQLAC IRWLMQSSCR CRPLHAVGKR  180
TPRFPVSYLR KKEDGENYVS PKKKRRKSEI NANEHSAVLA LTEALQRVDS PQMSQTPRRR  240
TENMKSSPVQ SWDRMSESSP ANLRDAFINE NWSESGIGCG GADLASVRDA SSLAELEGIG  300
TVEVHKKGKK FYGNKIRVEK NGNSQSDDGG EACSGTEEEQ KFSTLKGKVE IEMPNAKIDE  360
TSHWGQRKRS KKKFSDDEPA DLIGLQTLAL VSAMEFESSS LLDDERTTQT GDEKSSVPES  420
ASTSHHRDKI KLSRQKEKAT SGVEGTTSRK PKRQRYPLSS AKSVPEANKQ PQPISSDMLK  480
RKHEAVVAKV LDEEENTSVI KGKRSAQISS PSKQLKSSKL PDGSFSADQK TIANNLAKST  540
EQVPVASQVI LSTRKTSRRK MDLKRAMIPK VNVLKNQTSK YTISLQDGAT HIKDKLSCIL  600
SSPMVRRWCA FEWFYSAVDY PWFARREFVE YLNHVGLGHI PRLTRVEWGV IRRHVFSLGK  660
PRRFSERFLH EEREKLQQYR ESVRKHYMEL RTGLREGLPT DLARPISVGQ RVIAIHPKTR  720
ELHDGSVLTV DHDRCRVQFD SAELGVEFVK DIDCMPSNPL DNMPEALRRQ KISVLPKELL  780
VNGKPHIGEF TAIEKLRNAQ NPMNALMKQV QVEANHANLL AKATSTDIVN AQGAFSHPSR  840
VSHIELKEYD IRALSELNHA LDKKAISSMK EGEDAFARIG EALDSVDRSH SVSESRTQMI  900
RSQEEANTGP CHQNQLIPST PEPQVNSSVS GPQSNDSEKN ETAIPSELIS SCVAALLMIQ  960
TCTERQYPPA DVAQIIDSAV TSLHPCCPQN LPIYREIQMC MGRIKTQILA LIPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	206	RKKEDGENYVSPKKKRRK
2	201	205	KKKRR
3	201	206	KKKRRK
4	202	206	KKRRK
5	449	454	KPKRQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0424s0110.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC184086	1e-143	AC184086.2 Populus trichocarpa clone Pop1-58C2, complete sequence.
GenBank	AC214688	1e-143	AC214688.1 Populus trichocarpa clone ACSB193-J04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011036808.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like isoform X5
TrEMBL	A0A2K2AAT8	0.0	A0A2K2AAT8_POPTR; Uncharacterized protein
STRING	XP_002512389.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-169	DNA binding

Link Out ? help Back to Top
Phytozome	SapurV1A.0424s0110.1.p