PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0428s0050.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 302aa MW: 32223.8 Da PI: 9.5653

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0428s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.7e-39	51	110	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk k++s SapurV1A.0428s0050.1.p 51 QENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKTKSTS 110 7889****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-26	51	107	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-32	52	108	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.376	54	108	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	56	92	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MIQELFGGAG LIGGERKIPI NATILEGAPS PSLSSKTTTT PAPNSTPSSA QENLRCPRCD 60 SSNTKFCYYN NYNLTQPRHF CKTCRRYWTK GGALRNVPIG GGCRKTKSTS VSASAGKSCT 120 NKIKTMASEF GRSGFGNGFD HELSSSSIMQ ASPQNSHIFA LLRATLNPNP STLRNSISVI 180 GNHMISEPAA ETAPWNARTL GLDPISQVSS SPSWKSNQHQ QNGFTVGEAQ NTGIQELYQR 240 LRSSTNYYTD NPSAIVRSNV TIPSSTSSTI LGSAPVAGGE LGYWNPAFSW SDLPTTNGAY 300 P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0428s0050.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144749	1e-127	EF144749.1 Populus trichocarpa clone WS01117_M16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024456610.1	1e-162	dof zinc finger protein DOF2.4
TrEMBL	A0A2K2AG93	1e-158	A0A2K2AG93_POPTR; Uncharacterized protein
STRING	POPTR_0007s11620.1	1e-156	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-34	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	SapurV1A.0428s0050.1.p