PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0429s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 316aa    MW: 35230.8 Da    PI: 9.0694
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0429s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.21.6e-3267120255
                 G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             prlrWtp LH++Fv+ave+LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR+
  SapurV1A.0429s0100.1.p  67 PRLRWTPHLHHCFVHAVESLGGEDRATPKMVLQIMDVKGLTISHVKSHLQMYRS 120
                             8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.94463123IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-3163122IPR009057Homeodomain-like
SuperFamilySSF466893.94E-1564121IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-2367121IPR006447Myb domain, plants
PfamPF002494.7E-668119IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MKKLEIESSV NKGPASSSPD HTGDDHAMKS SPDDIIRVTE RGVVGVSSRE INLKSATVRP  60
YVRSKTPRLR WTPHLHHCFV HAVESLGGED RATPKMVLQI MDVKGLTISH VKSHLQMYRS  120
MKHEQMIQEA AMEAKKNGKE PQMHPSNYLS HSMCYQQNRQ LNGKGLVNSN TLLHQALGVR  180
NPATGLALRN ASFPSQRKDK KGLWIGKKVK EPFLHEEEKT SKDWEQTPDN YIIFNDLLKS  240
FNGEETNDQE KMSAGATGCN ASNQSLEELD GIAERIDGDR MSLSQNSKVS ESFLRLRKAK  300
NSSDANDVSL ELTLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-1968123459Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-1968123459Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-1968123358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1968123358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1968123358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1968123358Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-1968123459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-1968123459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-1968123459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-1968123459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-1968123459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-1968123459Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0429s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1495751e-67AC149575.1 Populus trichocarpa clone Pop1-41G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383901.21e-173myb family transcription factor PHL12
TrEMBLA0A3N7EVF11e-158A0A3N7EVF1_POPTR; Uncharacterized protein
STRINGcassava4.1_021436m1e-99(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93812840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.11e-32G2-like family protein