PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0449s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 202aa    MW: 22579.4 Da    PI: 6.539
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0449s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.23.9e-171862145
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                            k+ienks  +vtf+kRr+g++ KA E+ vL++ae+avi fs+  k
  SapurV1A.0449s0130.1.p 18 KKIENKSSLEVTFTKRRHGLFNKACEIGVLTGAEAAVIAFSPGKK 62
                            68***************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-231069IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-231081IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.0771070IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-151232IPR002100Transcription factor, MADS-box
PfamPF003193.5E-181966IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-153247IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-154768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAAKVKKQSL GRQKIEIKKI ENKSSLEVTF TKRRHGLFNK ACEIGVLTGA EAAVIAFSPG  60
KKAFAFGYPS VDTIIERYLS ENTKEGGWVI NTSASTSHDH RAVQESRREY EEALAKKEEE  120
TKRVEMLKEG GEVGFGSDRF WWDRSIQGMG LEELEQYVAS MEELKKNVGI RVDELEKASN  180
SPSRFLDLDS GVHAIENFST N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0449s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047019.11e-102PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2K2AMY24e-80A0A2K2AMY2_POPTR; Uncharacterized protein
STRINGPOPTR_0004s00400.11e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-28AGAMOUS-like 62