PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0451s0270.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 335aa MW: 35482.7 Da PI: 9.0634

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0451s0270.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.1	8.3e-38	70	129	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt GGalr vPvGgg+r+nk+s+ SapurV1A.0451s0270.1.p 70 ETALKCPRCQSTNTKFCYFNNYSLSQPRHFCKTCRRYWTSGGALRSVPVGGGCRRNKRSK 129 6789*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	53	118	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-32	72	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.152	73	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MVFSSIPAYL GNWQQQPGNQ PPGAGNENPQ LPPQPAPPPG GGYGDIGSTG SIRPGSMTDR 60 ARLAKIHLPE TALKCPRCQS TNTKFCYFNN YSLSQPRHFC KTCRRYWTSG GALRSVPVGG 120 GCRRNKRSKG SGRSKAVPSS SGGPASNCCT ADILGHMPPP PPQPPIFPPL HHLGDYNPAD 180 IGLNFGGIHH SIGVAAGGGD GVEFQIGSGT SPNGVAGSIL SSGLVEQWRL QQVQQQMQQF 240 PFLSNLEPPS AMYSFEGGGI ESSNYGGQIR SKPVETTGAT HPATVKMEEN QRLNLSKKVL 300 GISGIDQHWG GNNAWTDLPA GSVKSNQYED KREP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0451s0270.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028557.1	0.0	PREDICTED: dof zinc finger protein DOF3.6-like isoform X1
TrEMBL	A0A2K1ZCA6	1e-176	A0A2K1ZCA6_POPTR; Uncharacterized protein
STRING	POPTR_0008s05520.1	1e-172	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	2e-42	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	SapurV1A.0451s0270.1.p