PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0453s0210.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 203aa    MW: 22819.6 Da    PI: 9.3506
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0453s0210.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.87.8e-31108455128
                     NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             e+e yfFs+r+ ky++g+r+nrat sgyWkatg dk+++++ ++++ g+kktLvfy+g+ p+g++tdW+mheyrl
  SapurV1A.0453s0210.2.p  10 EQERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKQIVTSkGKQVAGMKKTLVFYRGKPPHGTRTDWIMHEYRL 84 
                             5689*********************************9998566779**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.2771119IPR003441NAC domain
SuperFamilySSF1019411.57E-3510119IPR003441NAC domain
PfamPF023653.4E-141384IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAFVVSGDLE QERYFFSTRE AKYPNGNRSN RATGSGYWKA TGIDKQIVTS KGKQVAGMKK  60
TLVFYRGKPP HGTRTDWIMH EYRLASTETT ACNALKNNST QGPVVVPVEN WVLCRIFLKK  120
RGSKNEEENI QAGHDDRLPK LRTTKPVFYD FMTKEKTTDL NLAPSSSFSG SSGITEEVPC  180
NESDDHEESS SCNSFPYFRR KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-321012470170NO APICAL MERISTEM PROTEIN
1ut4_B5e-321012470170NO APICAL MERISTEM PROTEIN
1ut7_A5e-321012470170NO APICAL MERISTEM PROTEIN
1ut7_B5e-321012470170NO APICAL MERISTEM PROTEIN
3swm_A4e-321012473173NAC domain-containing protein 19
3swm_B4e-321012473173NAC domain-containing protein 19
3swm_C4e-321012473173NAC domain-containing protein 19
3swm_D4e-321012473173NAC domain-containing protein 19
3swp_A4e-321012473173NAC domain-containing protein 19
3swp_B4e-321012473173NAC domain-containing protein 19
3swp_C4e-321012473173NAC domain-containing protein 19
3swp_D4e-321012473173NAC domain-containing protein 19
4dul_A5e-321012470170NAC domain-containing protein 19
4dul_B5e-321012470170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0453s0210.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7700120.0KP770012.1 Populus tomentosa apical meristem (NAM) family protein (Potri.001G061200) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036132.11e-128PREDICTED: NAC domain-containing protein 18-like
SwissprotQ9FY936e-68NAC83_ARATH; NAC domain-containing protein 83
TrEMBLB9GMQ31e-126B9GMQ3_POPTR; NAC family protein
STRINGPOPTR_0001s13380.11e-127(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-68NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]