PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0459s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 483aa    MW: 53605.1 Da    PI: 5.7014
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0459s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.6e-11136157526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              C f+++tGtCk+ ++CkF+H+
  SapurV1A.0459s0130.1.p 136 DCAFYMKTGTCKFEANCKFNHP 157
                             7********************9 PP
2zf-CCCH34.14.6e-11183205527
                             --SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                             +C+++++tG CkyG  C+F+H++
  SapurV1A.0459s0130.1.p 183 ECKYYLKTGGCKYGKACRFNHSR 205
                             7********************95 PP
3zf-CCCH36.39.2e-12234257326
                             S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                             +++C f++r+G Ck+G++Ck++H+
  SapurV1A.0459s0130.1.p 234 EKECEFYMRNGSCKFGANCKYNHP 257
                             689********************9 PP
4zf-CCCH25.81.8e-08369394227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             +++ C+f++++G Ck+ ++CkF+H++
  SapurV1A.0459s0130.1.p 369 GQPQCSFYMKFGDCKFKSNCKFHHPK 394
                             7899********************96 PP
5zf-CCCH35.12.3e-11416439326
                             S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                             + +C++++r+G+Ck+G+ CkF H+
  SapurV1A.0459s0130.1.p 416 QNICSHYSRYGICKFGPACKFDHS 439
                             679********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.37E-6131160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619131159IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-5131158IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-9135157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4137156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286178206IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4178205IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6181206IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-9183205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-6184205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159231259IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-6231258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6232258IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9234257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4237256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23367395IPR000571Zinc finger, CCCH-type
SMARTSM003560.018367394IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5369394IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5371396IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6411439IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4413440IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587413441IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8416439IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4418440IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDHQVDAPIP IIHNETPQLG FQIFSSSPRY PSPSSDPDQK AQDDDNHLHH ELQNQLDLKE  60
EFPNSNDSHE EEAEEEEELK SEERDKRSTV SHDAESIEKV GDDGDDLENA NERGNDYANS  120
SSSRSHQYPV RPDADDCAFY MKTGTCKFEA NCKFNHPLRR RNQTVKDKVK EREEATERPS  180
LTECKYYLKT GGCKYGKACR FNHSRAKNSV TPLKIPISPA LELNFLGLPI RLGEKECEFY  240
MRNGSCKFGA NCKYNHPDPT AVGGSDHPPT FLNGGSASLP APSPSSVGSW SSPRALNDPT  300
SFIPIVFSPN QGVPPQSPDW NGYQASLYPP ERSLHPPLSY ALINLATESN VYAPQQQQIV  360
VDEFPERPGQ PQCSFYMKFG DCKFKSNCKF HHPKNRISKS PPLTLNDKGL PLRPDQNICS  420
HYSRYGICKF GPACKFDHSI QPASSIGSSD DQNTAFGNSV TQEAARMAEC GSGSDTAVEQ  480
PV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0459s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438164.10.0zinc finger CCCH domain-containing protein 67
SwissprotQ5RJC51e-133C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A2I4KKM10.0A0A2I4KKM1_POPTR; C3H family protein
STRINGPOPTR_0012s09400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-130C3H family protein