PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0459s0190.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 173aa    MW: 19406.1 Da    PI: 8.221
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0459s0190.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.61.3e-1932122199
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             ffkvl     + s +l++p kf+ + ++   ++++  led+sg++W+vk+  +   +++vl++GW+eF++++gL+ gDf++F ++  
  SapurV1A.0459s0190.2.p  32 FFKVL--IGDMFSTILYFPPKFTPTVSSL--NGQETFLEDSSGQRWKVKV--SVLNDSFVLQEGWSEFASDHGLELGDFIIFNYIMG 112
                             77888..44455557*******9998544..45689**************..666667**************************977 PP

                             SEE..EEEEE-S CS
                      B3  88 sefelvvkvfrk 99 
                             s f   v++++k
  SapurV1A.0459s0190.2.p 113 SHF--EVHIYDK 122
                             888..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-2329125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-2330125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.76130123IPR003340B3 DNA binding domain
CDDcd100173.11E-2031121No hitNo description
PfamPF023621.0E-1732122IPR003340B3 DNA binding domain
SMARTSM010192.7E-1032123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSSKVEACPM CTQSCLMTHG NKTNSRTLVS SFFKVLIGDM FSTILYFPPK FTPTVSSLNG  60
QETFLEDSSG QRWKVKVSVL NDSFVLQEGW SEFASDHGLE LGDFIIFNYI MGSHFEVHIY  120
DKSACERLDF SERRNQTTPN LAGEEICRGQ SKLKNHVLKA KMVAKNTSTN KK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0459s0190.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040418.11e-111PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X1
RefseqXP_011040419.11e-111PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X1
RefseqXP_011040420.11e-111PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X1
RefseqXP_011040421.11e-111PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X1
TrEMBLB9I3L41e-109B9I3L4_POPTR; Uncharacterized protein
STRINGPOPTR_0012s09470.11e-110(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.16e-15B3 family protein