PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0460s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 411aa    MW: 46386.5 Da    PI: 4.1314
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0460s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07256304247
                             SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                             ++WT eE++ + ++v   +       W+  ++t++  Rt k+++s+++++
  SapurV1A.0460s0050.1.p 256 NKWTDEEEQAFHEVVLSNPVSlgknFWDHLPSTFP-SRTKKELVSYYFNV 304
                             58*************8644444444**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-4252311IPR009057Homeodomain-like
SuperFamilySSF466892.47E-5254305IPR009057Homeodomain-like
PROSITE profilePS500906.191256305IPR017877Myb-like domain
CDDcd001676.01E-6257305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MVHKRAFSDD NLYELACKHP RQMEHIDHLA PIFPLDSGHQ KHLVSGDDSF RKYQEVGRSA  60
SDLFSECSIG TSKGFETDDN GSFPHFLWTS NGILEADNLS FFPEYFDHGH QPRALLEPEE  120
ACPSLDYPIQ KQVSVGPEHQ AYVPEWDYQG SSTSLNQLDE YNLQVVRAHS SSPGVTIDGG  180
YEENLMGTCI LPMPDLEASE NYCYEATNHD CACPDAGYIR CIKQHVSEAR LKLRENLGEE  240
IFKELGICDM GEVIANKWTD EEEQAFHEVV LSNPVSLGKN FWDHLPSTFP SRTKKELVSY  300
YFNVFMLQKR ADQNRFDPLN IDSDDDEWQK NEGEAVEEDE DSAVESLTGQ DSSASCQEDH  360
AEKCNEYVED EDEDEAVASK DDVDNVVHRV ATDAEYEGDV DDFSGAHVRI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0460s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324102.20.0uncharacterized protein LOC7467885
TrEMBLB9IK580.0B9IK58_POPTR; Uncharacterized protein
STRINGPOPTR_0017s12750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2153810