PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0460s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family FAR1
Protein Properties Length: 632aa    MW: 72214.4 Da    PI: 6.1276
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0460s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1349.9e-1173170277
                    FAR1   2 fYneYAkevGFsvrkskskks................krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkakl 66 
                              Yn+YAk++GFs+ +++ ++s                k++++i++r+ + s eg ++e++ k      ++++rr r+  r gC+a +
  SapurV1A.0460s0120.1.p  73 LYNTYAKQTGFSIHVNSCYRSkkdnsisillnsyyrsKKDNSIISREVCFSTEGLHREKQAKkmdsgeETRRRRARPIMRFGCQALM 159
                             7*****************999899999999999999988999999999999999998888889***99999999************* PP

                    FAR1  67 kvkkekdgkwe 77 
                             +v+++++ kw 
  SapurV1A.0460s0120.1.p 160 TVRRRDNRKWS 170
                             **********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-873170IPR004330FAR1 DNA binding domain
PfamPF105517.7E-23281363IPR018289MULE transposase domain
PROSITE profilePS5096610.287494536IPR007527Zinc finger, SWIM-type
PfamPF044349.6E-8498535IPR007527Zinc finger, SWIM-type
SMARTSM005759.3E-5511538IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MWKLGVSMFL ISDFVLQKKN ITRMIDEPAI EAKDLVNSYV VTLEDEGDEC CVVEDAERPM  60
VLDVVKQNDS RDLYNTYAKQ TGFSIHVNSC YRSKKDNSIS ILLNSYYRSK KDNSIISREV  120
CFSTEGLHRE KQAKKMDSGE ETRRRRARPI MRFGCQALMT VRRRDNRKWS HKQDYDPNNS  180
FSESLSSPGM GLDAPVIVLT EDDETVGKMI FNFLNCINNV GRERLSNFGI DAQNILGFFK  240
IMLASDPAFF HAIQVDEEDR LSSVFWVDTR SRIVCDCFSD VVAFGTTYQA NQYKMPFAPF  300
AGVNHHKQSV LFGCALLADE TESSFIWLFT TWLEAMLGQP GLIITDYDSA MTRAIESFFP  360
PINPLILLLA HHDKMPKEMG RAYSSLQKTF QVKLDRCINK TETPDEFEPT WKSGSVSSLF  420
YGYANARTTL QDFAEQYVNV LDDLYEKEAK AEFETFYTKP ILKTPLRMEK QAAEVYTKNL  480
FSVVQDEEQK FNLFNVEMEE PPLMSTSEKI ASCSCKIFQF VGIRCRHVIA LFKATNVFIL  540
PQNYILQQLT KNAKDDAILD ILSCLDVPSI SHRCENLQYN VLYQEAIKCG GLATDHSFKV  600
ALNTLREARI KICGSKKNAI SAQKRETEHD F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0460s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661125.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLA5AFF70.0A5AFF7_VITVI; Uncharacterized protein
STRINGEOY036120.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-83FAR1-related sequence 5