PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0462s0100.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

G2-like

Protein Properties

Length: 170aa MW: 18390.8 Da PI: 7.0255

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0462s0100.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.1	2.2e-34	38	92	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerF++av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl SapurV1A.0462s0100.3.p 38 KPRLRWTADLHERFIDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 92 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.6E-33	35	93	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.669	35	95	IPR017930	Myb domain
SuperFamily	SSF46689	3.23E-17	37	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-25	38	93	IPR006447	Myb domain, plants
Pfam	PF00249	8.5E-9	40	91	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MYSAIHSLPL DGHGDFQASL DGINLSGDAC LVLTTDPKPR LRWTADLHER FIDAVTQLGG 60 PDKATPKTIM RTMGVKGLTL YHLKSHLQKY RLGKQSCKES TDNSKDVGIA PSVAESQDTG 120 SSTSASSGMI AQDLNEYAVS TLNMSNLFQL SLCSNLYCLL SFKQWSPGY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0462s0100.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF146817	0.0	EF146817.1 Populus trichocarpa clone WS01214_H04 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002323774.2	1e-92	protein PHR1-LIKE 3
Swissprot	Q94A57	7e-69	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A9PEQ8	3e-91	A9PEQ8_POPTR; Uncharacterized protein
STRING	cassava4.1_012160m	1e-79	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	5e-67	G2-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0462s0100.3.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]