PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0465s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 186aa    MW: 21149.9 Da    PI: 7.4091
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0465s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.72.9e-17118150133
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                             C++C++ +Tp+WR gp g++tLCnaCG++y   
  SapurV1A.0465s0200.1.p 118 CTHCQADNTPQWRIGPLGPRTLCNACGVRYSAG 150
                             *****************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-11112162IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.422112147IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-13116173No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13116149IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.34E-14117166No hitNo description
PfamPF003201.3E-14118148IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVSLFLYALT FFFTTSDDVY NVSDDLDWTG SELCAPQDPI ESLDGFISAN ELSILEDFGD  60
FFGKSEEEII KTTPSRDFEL GMTKKKPRSK RRLKHGAWSM KDFELSALKN QEFPVRICTH  120
CQADNTPQWR IGPLGPRTLC NACGVRYSAG RLFPEYRPAA SPSFDQNKHS NFHKQILRRR  180
ASLLQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18493KKPRSKRRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0465s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457129.16e-91GATA transcription factor 7
TrEMBLA0A3N7FUH91e-104A0A3N7FUH9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s06720.12e-95(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1634779
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-31GATA family protein