PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0465s0260.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YB
Protein Properties Length: 213aa    MW: 23840.6 Da    PI: 6.0313
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0465s0260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1763.7e-5537132297
                   NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                             +eqd+flPianv+rimkk +P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plk+yl+
  SapurV1A.0465s0260.1.p  37 KEQDHFLPIANVGRIMKKEIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLS 123
                             89************************************************************************************* PP

                   NF-YB  89 kyrelegek 97 
                             kyre+egek
  SapurV1A.0465s0260.1.p 124 KYREIEGEK 132
                             ******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-5233156IPR009072Histone-fold
SuperFamilySSF471138.39E-4039159IPR009072Histone-fold
PfamPF008085.3E-2842106IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.4E-197088No hitNo description
PROSITE patternPS0068507389IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.4E-1989107No hitNo description
PRINTSPR006152.4E-19108126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEDESHKNGA DGHSGESPES PCLKSCGSSS NNHGNSKEQD HFLPIANVGR IMKKEIPGNG  60
KISKDAKETV QECVSEFISF VTGEASDKCQ REKRKTINGD DIIWAITTLG FEDYVAPLKL  120
YLSKYREIEG EKLNAPKQQR IDHQSSQQQN QLEQEQNMIM PPYTSIYSSA ALMSQPPSFM  180
AADHKPYPLP FSPNSIQKHL QHQDKVDPVE HW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B3e-4437127494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4437127494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0465s0260.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306260.21e-130nuclear transcription factor Y subunit B-7
SwissprotQ9SIT91e-72NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLB9H4A91e-129B9H4A9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s06650.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132492430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.17e-71nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]