PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0470s0050.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Protein Properties

Length: 116aa MW: 13439.3 Da PI: 4.9835

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0470s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.4	3.3e-10	11	90	9	84
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkl 84 + ++rl +p ++++++++ +++ + +e ++ ++W+++l++r+ + v+t+ W +Fv+++gL++gD + + + SapurV1A.0470s0050.1.p 11 RTDIECRLAFPTASLRAFSMPE-GETAVYFEATDTleKEWNFRLSIRGENDPytkPVITGDWLQFVRDKGLRVGDKINLWR 90 4555699******9997775.55688888877777***9855544444689****************887764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-12	4	93	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.13E-14	7	93	No hit	No description
SuperFamily	SSF101936	3.4E-11	7	92	IPR015300	DNA-binding pseudobarrel domain

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MEVLMEKELS RTDIECRLAF PTASLRAFSM PEGETAVYFE ATDTLEKEWN FRLSIRGEND 60 PYTKPVITGD WLQFVRDKGL RVGDKINLWR EEGVTGVRYS VRAERKIFGF WVNVQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0470s0050.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028527.1	8e-38	PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBL	A0A3N7G753	1e-63	A0A3N7G753_POPTR; Uncharacterized protein
STRING	POPTR_0004s23010.1	5e-38	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11016	3	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-06	related to ABI3/VP1 2

Link Out ? help Back to Top
Phytozome	SapurV1A.0470s0050.1.p