PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0470s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 267aa    MW: 30793.9 Da    PI: 5.1731
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0470s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.11.7e-162364950
                            HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                  SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                            ++ +fskR n++ KKA+E+ +LCd++v+++ f+++  +++++
  SapurV1A.0470s0120.1.p 23 ASMSFSKRTNTLKKKAHEIQTLCDVKVCMVCFGPDSPVQTWP 64
                            789**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0034766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.0591567IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-142087IPR002100Transcription factor, MADS-box
PfamPF003196.5E-142463IPR002100Transcription factor, MADS-box
CDDcd001208.90E-122664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAEIRTASMP NYKRKKFLTR DQASMSFSKR TNTLKKKAHE IQTLCDVKVC MVCFGPDSPV  60
QTWPEEAVEV KDAIMSYKGI CYRKKYESSL TGYLQDKKMK LELKKQKEMK KVNKERMAKW  120
SDHVNGLSDD SLRDTIEILE SKLFDLKEKI KLSMQRSKVK ATQDRFDMEL EMDGSSVPSR  180
AAGATESPAE AMDTNIEVVE TVGNNDKDAA CSSFEMPPPL PKDSSDWMEN LRNWMENDEA  240
YQHGFENDDW FNELEAKQQY DDCQLW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
182106RKKYESSLTGYLQDKKMKLELKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0470s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028315.11e-142PREDICTED: agamous-like MADS-box protein AGL19
TrEMBLA0A2K2AYI71e-139A0A2K2AYI7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23090.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1616059
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.12e-12AGAMOUS-like 75