PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0476s0230.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LBD

Protein Properties

Length: 209aa MW: 22441.4 Da PI: 7.7069

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0476s0230.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.2	7.3e-30	2	105	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C++ Cvl+ + p++q +++ +++k+FG+s +++l++a+pe++r+ +++sl++eA+ r+ +Pv+Gavg++++ SapurV1A.0476s0230.1.p 2 SCNGCRVLRKGCSETCVLRSSLhwiptPEAQGNATLFLAKFFGRSDLMSLISAVPESQRPVLFQSLLFEACGRTVNPVNGAVGLLWS 88 6**********************9999****************************************************** PP DUF260 83 lqqqleqlkaelallke 99 ++++++q+++e++l +e SapurV1A.0476s0230.1.p 89 GNWNVCQAAVEAVLSGE 105 ********9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.532	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.3E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCVLR SSLHWIPTPE AQGNATLFLA KFFGRSDLMS LISAVPESQR 60 PVLFQSLLFE ACGRTVNPVN GAVGLLWSGN WNVCQAAVEA VLSGETLRPL PGILPGVLAP 120 NCDESSDSFS AAAYAVHSMT WNQSKPFDKE NTNQVVSDHH VNLCLARGRG GRDKRGRDAV 180 SFYTGGESET TSFESSGADK KKLLNLFV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0476s0230.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028812.1	1e-146	PREDICTED: LOB domain-containing protein 39-like
Swissprot	Q9SN23	6e-62	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	B9IBU3	1e-134	B9IBU3_POPTR; LBD family protein
STRING	POPTR_0014s01770.1	1e-135	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	3e-64	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	SapurV1A.0476s0230.1.p