PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0484s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 129aa    MW: 14583.1 Da    PI: 10.3934
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0484s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.1e-11531143290
                             --SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                      B3  32 esktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                             + +    +d++gr+W++kl+ r++++    v ++ W ++v+a+gL ++Df++++++++ ++ 
  SapurV1A.0484s0030.1.p  53 NAINFNARDPTGRVWKFKLCTRNHGRYkkPVVRGDWLKYVRAKGLTVNDFIILTMVEDaNGV 114
                             45567889***********987776657799***********************98874554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-1124111IPR015300DNA-binding pseudobarrel domain
CDDcd100174.51E-1227110No hitNo description
SuperFamilySSF1019362.16E-1027111IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-854113IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MVCENYGDFI KDLKEKFTGV EIVLVNKKLT KTDIASCLAY PTGRAIQMLR GRNAINFNAR  60
DPTGRVWKFK LCTRNHGRYK KPVVRGDWLK YVRAKGLTVN DFIILTMVED ANGVSYSIRV  120
EPSLKLAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0484s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003253.13e-51PREDICTED: uncharacterized protein LOC105110050
TrEMBLB9HE552e-54B9HE55_POPTR; Uncharacterized protein
STRINGPOPTR_0007s02840.13e-55(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14473313