PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0484s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 175aa    MW: 20016.9 Da    PI: 8.0805
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0484s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.11.3e-24959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            k+i+n  +r++t+skRr gi+KKA ELSvLCd++v v+++s++g+l ++ss
  SapurV1A.0484s0090.1.p  9 KKIDNPCRRKITYSKRRDGIIKKATELSVLCDTDVGVLMYSPHGRLTTFSS 59
                            68***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.259161IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-28160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-25291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-19323IPR002100Transcription factor, MADS-box
PfamPF003194.3E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGRNKLPLKK IDNPCRRKIT YSKRRDGIIK KATELSVLCD TDVGVLMYSP HGRLTTFSSN  60
GRIEDIFLRY FDQSIEQGGC VLLEKLNEIR QKLQEGREKM RSYNPDVVDI NAIHDANAHR  120
QFLFDAIQNI EKLSMEIFHE PIDLQKSESL QVTLPATRDA HLTAEELVYA NGNR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0484s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881061.21e-55agamous-like MADS-box protein AGL104
TrEMBLA5C3B39e-52A5C3B3_VITVI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1753967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.13e-25AGAMOUS-like 66