PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0486s0070.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 416aa    MW: 46583.5 Da    PI: 4.9645
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0486s0070.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.11.3e-12134155526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              C f+++tGtCk+G +CkF+H+
  SapurV1A.0486s0070.2.p 134 DCAFYMKTGTCKFGVNCKFNHP 155
                             7********************9 PP
2zf-CCCH31.92.2e-10178201225
                             -S---SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                             ++ +C++++rtG CkyG  C+F+H
  SapurV1A.0486s0070.2.p 178 GQTECKYYLRTGGCKYGKACRFNH 201
                             6789******************** PP
3zf-CCCH34.53.3e-11232256226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             +++ C +++r+G CkyG++Ck++H+
  SapurV1A.0486s0070.2.p 232 GEKQCEYYMRNGSCKYGGNCKYNHP 256
                             6788********************9 PP
4zf-CCCH28.42.9e-09368393227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             ++ lC++f+++G Ck+ ++CkF+H++
  SapurV1A.0486s0070.2.p 368 GQQLCSYFMKFGDCKFKSNCKFHHPK 393
                             788*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.35E-6128157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.591129157IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5129156IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10134155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5135154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911176204IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4176203IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-8178201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5179202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5182202IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.206230258IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5230257IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9232256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6232257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4235255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671366394IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4366393IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-6368393IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5369394IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MERQIELPIQ IQTETPQIGF QSSSSPPPSH PVPSQSSDPD QTAQDIDNCL HQELQNQIDL  60
KEEFSNLNDS HEEEEEEEEF KSEESDKKSE KIDENDNESS EKEGDNLEMK NESNGDADNN  120
RMHHQYPVRP EADDCAFYMK TGTCKFGVNC KFNHPVRRKN QAVNEKVKER EEATEMPGQT  180
ECKYYLRTGG CKYGKACRFN HTGEFLFSVP PLKTPLSPIL ELNFLGLPIR PGEKQCEYYM  240
RNGSCKYGGN CKYNHPDPMA AGGSDPTTAF VNGGSASLPA PSPSSVGSWS SPRGLNDPTS  300
FVPFLFSPNQ GVPSYSSEWN GYQGPVYPPE RSLHRPPSYA MSNSATENNL YAPQQQQTVV  360
DEFPERPGQQ LCSYFMKFGD CKFKSNCKFH HPKNLIPKSP SLTLNDKGLP LRPVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0486s0070.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2233370.0CU223337.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442496.10.0zinc finger CCCH domain-containing protein 67 isoform X1
RefseqXP_024442497.10.0zinc finger CCCH domain-containing protein 67 isoform X2
TrEMBLA0A2K1XK950.0A0A2K1XK95_POPTR; Uncharacterized protein
STRINGPOPTR_0012s09400.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-102C3H family protein