PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0487s0170.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C3H

Protein Properties

Length: 539aa MW: 58648.9 Da PI: 8.5433

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0487s0170.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.2e-06	486	510	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++f C+ G+ C F H+p SapurV1A.0487s0170.1.p 486 QKPCMYFKTPKGCRNGSDCLFQHDP 510 789********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.164	484	511	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.01E-5	488	510	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MKRSSKSNRV SWAPGHNLCQ ERLFVSEDCP SKVGRQVHDH LQKNASLRLL HSSGKEPNDS 60 PPGFEGRHFL NPSKKELSCF PMIQWKCPPK FAVSSNWHVT AGEESQESQA QKLREIRSLE 120 AVYPRPSSVP PSPVVSVDVE DADYDDSLTP IIPLVPVEEE EVPELPPDLT GPLKTSQPPE 180 LPPFILSSGT LNTSKCNTPA LNPHKPAFGK LPNPGTNLIS AASAAVTAIM KNKGHGSLID 240 TGLLVNILSD PKMIEELAGG KQALPVTCRP FTSSKPPLCE KPAVVSSQST ASGNLQPLHS 300 EEQPWSKPPC QIPISCPKPA LSLSSNGSFC FQPSQMHPTV TRASMHQDTA PASGFGVCSS 360 IPVPIPVGNV FSTPNSVPTV STAPRESIST QVSLKDFGPD PMSNLVQPDL VMKPVQPNSV 420 PRAGMKTNPL KDVDYIKNLI REHGTVKNEI HERSMSMPHN GRHYNHTQNQ ELMQNIKKRE 480 SKHKFQKPCM YFKTPKGCRN GSDCLFQHDP SFQFQTGGPL DAPVAKKMKF GGEIVGRT*

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MKRSSKSNRV SWAPGHNLCQ ERLFVSEDCP SKVGRQVHDH LQKNASLRLL HSSGKEPNDS  60
PPGFEGRHFL NPSKKELSCF PMIQWKCPPK FAVSSNWHVT AGEESQESQA QKLREIRSLE  120
AVYPRPSSVP PSPVVSVDVE DADYDDSLTP IIPLVPVEEE EVPELPPDLT GPLKTSQPPE  180
LPPFILSSGT LNTSKCNTPA LNPHKPAFGK LPNPGTNLIS AASAAVTAIM KNKGHGSLID  240
TGLLVNILSD PKMIEELAGG KQALPVTCRP FTSSKPPLCE KPAVVSSQST ASGNLQPLHS  300
EEQPWSKPPC QIPISCPKPA LSLSSNGSFC FQPSQMHPTV TRASMHQDTA PASGFGVCSS  360
IPVPIPVGNV FSTPNSVPTV STAPRESIST QVSLKDFGPD PMSNLVQPDL VMKPVQPNSV  420
PRAGMKTNPL KDVDYIKNLI REHGTVKNEI HERSMSMPHN GRHYNHTQNQ ELMQNIKKRE  480
SKHKFQKPCM YFKTPKGCRN GSDCLFQHDP SFQFQTGGPL DAPVAKKMKF GGEIVGRT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0487s0170.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024457963.1	0.0	zinc finger CCCH domain-containing protein 6
TrEMBL	A0A2K2AFD5	0.0	A0A2K2AFD5_POPTR; Uncharacterized protein
STRING	POPTR_0005s11800.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8683	7	9

Link Out ? help Back to Top
Phytozome	SapurV1A.0487s0170.1.p