PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0495s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family DBB
Protein Properties Length: 348aa    MW: 37642.2 Da    PI: 4.3669
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0495s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box248.2e-08432635
                zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHk 35
                            C+++++  ++ fCe+++  lC dC ++ H+
  SapurV1A.0495s0100.1.p  4 CELCGSS-ARMFCESDKASLCWDCDEKVHS 32
                            *****99.*******************995 PP
2zf-B_box21.45.2e-0786117335
                zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 
                             ++ C++++    + fCe++q  lC dC ++ H+
  SapurV1A.0495s0100.1.p  86 MKGCELCGGS-TRMFCESDQASLCWDCDEKVHS 117
                             567*****99.*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.2E-10145IPR000315B-box-type zinc finger
PROSITE profilePS501198.944145IPR000315B-box-type zinc finger
CDDcd000214.57E-6445No hitNo description
PfamPF006435.5E-6432IPR000315B-box-type zinc finger
SMARTSM003361.6E-1084130IPR000315B-box-type zinc finger
PROSITE profilePS501198.94484130IPR000315B-box-type zinc finger
CDDcd000215.38E-689130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MKGCELCGSS ARMFCESDKA SLCWDCDEKV HSANFLVAKH CRTLLCKVCQ SPTPWKASGS  60
KFAPTVSICE SCFTIPNKTE ETGERMKGCE LCGGSTRMFC ESDQASLCWD CDEKVHSANF  120
LVAKHCRTLL CKVCQSPTPW KASGSKFAPT VSICESCFTI PNNKRHIQDE NVVTSDQVSQ  180
GGGNYLDESE NDQEFDGDGD TDDDSDEDEE EEEEEEDGDD QVVPWSGPTA PSSSSPAPPL  240
ASSSSEEETS CAGRNGFLKR TRESNVDLDS DGEIGCSSSH KIGGGRLSNE KGNSSSSSRP  300
WKQARTSVNV EEDDQAGSRS TAIIETIKGT CSRMEKTRLL QFLGSAE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0495s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164490.0AC216449.1 Populus trichocarpa clone POP006-O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024467600.11e-170B-box zinc finger protein 24-like
TrEMBLA0A3N7H9291e-169A0A3N7H929_POPTR; Uncharacterized protein
STRINGPOPTR_0011s12810.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2067634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.17e-14salt tolerance homolog2