PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0498s0050.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 258aa MW: 28331.5 Da PI: 8.9333

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0498s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.6e-40	33	94	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss SapurV1A.0498s0050.1.p 33 KDQALNCPRCTSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 94 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-27	25	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.5E-34	34	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.022	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDETPTQWPQ GINGVVKSME GPDMLERRAR PQKDQALNCP RCTSTNTKFC YYNNYSLSQP 60 RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK RSSSNPSSSA AVAAEKKFPL DLTQANFPQS 120 ATQNPKIHEG PDLNLAYPPS HISAMELLKS AGMSPRGFNA FMSIPAASDS NNMFSTGFPL 180 QEFKPSTQNF SLEGFESGYS NIQGVHDQSR SGARLLFPIE DLKQQVPSNS SGFERNTRGQ 240 GDSALGYWNG MLGGESW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0498s0050.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ402844	0.0	FJ402844.1 Populus tomentosa Dof1 (Dof1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002321982.1	1e-154	dof zinc finger protein 1
TrEMBL	B9IDM4	1e-153	B9IDM4_POPTR; Dof family protein
STRING	POPTR_0015s01160.1	1e-154	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	6e-47	Dof family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0498s0050.1.p