PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0498s0250.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Nin-like

Protein Properties

Length: 254aa MW: 29500.7 Da PI: 6.2676

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0498s0250.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.2	5.1e-26	144	192	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++le+++k+Fs+pi++AA+e++v+lTvLK++CR++ I+RWPhRkiksl SapurV1A.0498s0250.1.p 144 ALELEEIQKHFSMPITQAAREMKVGLTVLKKRCRELKIMRWPHRKIKSL 192 689********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.95	127	214	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-23	145	192	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MENPPHFDGW PCLGVDDDQD NFQKISELSP FESLFDPSIF LPFGKNINEF KPLEDISDDN 60 IFSESNLESW YNRENASIIR KPVLNPSIHA SFGQNFDSNV IRCADHLEDF SMLWVQSDCA 120 SSSSMKEEEE EESRKMSGRK RSVALELEEI QKHFSMPITQ AAREMKVGLT VLKKRCRELK 180 IMRWPHRKIK SLNSLINNVK EMGLGEYETI MLEEHKKLIE KLPDVELTER TKRLRQACFK 240 ANYKKRRLAA PYP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0498s0250.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002321399.3	1e-134	protein RKD4
TrEMBL	A0A2K1XGA6	1e-133	A0A2K1XGA6_POPTR; Uncharacterized protein
STRING	POPTR_0015s01410.1	1e-135	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	7e-41	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0498s0250.1.p