PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0501s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 389aa    MW: 42518.9 Da    PI: 7.8519
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0501s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07130150526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              C+ f++ G Ck Gd+C FaHg
  SapurV1A.0501s0160.1.p 130 ACPEFRK-GGCKKGDSCEFAHG 150
                             7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-5125151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.319125152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5129152IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5130150IPR000571Zinc finger, CCCH-type
SMARTSM0035611160183IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.042160184IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MMMIGEHFYP NPRPNPSVQI PQRDLYDEQT TSPSPSPSTI PSSPFTSFSA LDSLPALHRY  60
LPSNEPDPSF EDELDLPVDA FSCDHFRMYV FKVRRCGRGR SHDWTECPYA HPGEKARRRD  120
PQRYNYSGTA CPEFRKGGCK KGDSCEFAHG VFECWLHPAR YRTQPCKDGP ACRRRVCFFA  180
HTPEQLRLLP RHSPKGNGSG SWELDFGSLV VHPLDSYLTN AGSFVSSPTS ILTSPPVSPP  240
SDSPPMSPVS PGMIGGSGSM AFNSTGELVA SMRGLQLGKM TIGSPGGSWG VQYGSSFGSS  300
RRSSLRPGFC SLPSTPTRKL ATRSGLGQLD IWGDISTCEE PVMERVESGR DLRAKIYSKL  360
SKVNSMDPDL VESAVSGPDV GWVSELVK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0501s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1447420.0EF144742.1 Populus trichocarpa clone WS01117_K24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012777.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-113C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLB9ING60.0B9ING6_POPTR; Uncharacterized protein
STRINGPOPTR_0018s04720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.15e-97C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]