PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0504s0280.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 474aa    MW: 53488.3 Da    PI: 6.0345
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0504s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.53.5e-136464681374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lLl+cA++v++g+ e a+  L+++s+laspdgd+mqR+aayft +La r+++ +++l +al+p+++s    see+ ++ lf+e+
  SapurV1A.0504s0280.1.p  46 LIHLLLACANHVAAGSIESANIGLEQISHLASPDGDTMQRIAAYFTAGLADRILKGWPGLHRALNPKQAS--LISEEILVQILFFEL 130
                             689*****************************************************************98..79999***99***** PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                             +P+lk+s++++NqaI ea+ege++vHiiD++ s+++QW++Llq+L++Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++
  SapurV1A.0504s0280.1.p 131 FPFLKLSYVITNQAIIEAMEGERMVHIIDLNSSEPAQWINLLQTLSARPEGPPHLRITGIHE----QKEVLEQMAFRLTEEAEKLDI 213
                             **************************************************************....9******************** PP

                    GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll............................................... 214
                             +f+fn+ ++++le+l+le Lrvk+gEala+++vlqlh+ll                                               
  SapurV1A.0504s0280.1.p 214 SFQFNP-IVSKLENLDLEILRVKTGEALAISSVLQLHTLLamddemhrrnspsgsknpnsnhfqrvqinqnrrtlgdwlerdvvnay 299
                             ******.7999**************************************************************************** PP

                    GRAS 215 .............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                                          + s     +  ++L++++ lsPk++v++eqe++hn+ +++er++eal++y+alfd+le++++r s er+kvE++
  SapurV1A.0504s0280.1.p 300 ssspdsalsplslAASP----KMGSFLNALWCLSPKLMVITEQESNHNGFTLMERVTEALNFYAALFDCLESTVSRVSLERHKVEKM 382
                             ****9997754444444....4566************************************************************** PP

                    GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             l+g+ei+n++aceg++r+erhe+lekW  rle aGF+ +pls++   qa++ l+ ++ dgy+++ee+g+lv++W+dr+L+svSaW+
  SapurV1A.0504s0280.1.p 383 LFGEEIKNIIACEGTDRKERHEKLEKWILRLELAGFGIIPLSYHGRLQANRFLQSYGYDGYKIKEENGCLVICWQDRSLFSVSAWK 468
                             *************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.5820448IPR005202Transcription factor GRAS
PfamPF035141.2E-13346468IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAQEEGSSSV TSPPLQFLPW MPLSPGMGSP YPWLRELKSE DRGLCLIHLL LACANHVAAG  60
SIESANIGLE QISHLASPDG DTMQRIAAYF TAGLADRILK GWPGLHRALN PKQASLISEE  120
ILVQILFFEL FPFLKLSYVI TNQAIIEAME GERMVHIIDL NSSEPAQWIN LLQTLSARPE  180
GPPHLRITGI HEQKEVLEQM AFRLTEEAEK LDISFQFNPI VSKLENLDLE ILRVKTGEAL  240
AISSVLQLHT LLAMDDEMHR RNSPSGSKNP NSNHFQRVQI NQNRRTLGDW LERDVVNAYS  300
SSPDSALSPL SLAASPKMGS FLNALWCLSP KLMVITEQES NHNGFTLMER VTEALNFYAA  360
LFDCLESTVS RVSLERHKVE KMLFGEEIKN IIACEGTDRK ERHEKLEKWI LRLELAGFGI  420
IPLSYHGRLQ ANRFLQSYGY DGYKIKEENG CLVICWQDRS LFSVSAWKFR RYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-36304702380Protein SCARECROW
5b3h_D1e-36304702380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0504s0280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840730.0AC184073.2 Populus trichocarpa clone Pop1-50D1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299218.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLB9GM400.0B9GM40_POPTR; Uncharacterized protein
STRINGPOPTR_0001s06090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]