PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0505s0070.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 194aa MW: 21331.9 Da PI: 9.1336

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0505s0070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00074	23	45	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ F + + L H + H SapurV1A.0505s0070.1.p 23 YMCSHCDREFESGHALSGHYKAH 45 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.25E-5	21	53	No hit	No description
PROSITE profile	PS50157	12.092	23	50	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	25	45	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MMEKDSETSS DEETVTSTLR SRYMCSHCDR EFESGHALSG HYKAHSNKRK RKCMPGSVAE 60 PPVAPRNGSW LTHGAPTLAV QSGVKYETGY GSSSTRPQGG IKKDIELKIE AHRSHPYERD 120 VKKEAPRGGR LLNIMTLTHV VKINRRVDTD LARTVTNPVA EVSRKENGDT KLTSGKNGDE 180 DLDLELRLGF GPA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0505s0070.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011005305.1	7e-96	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	B9HA03	8e-93	B9HA03_POPTR; Uncharacterized protein
STRING	POPTR_0006s20940.1	1e-93	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16552	4	5

Link Out ? help Back to Top
Phytozome	SapurV1A.0505s0070.1.p