PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0514s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 344aa    MW: 38526.2 Da    PI: 8.3221
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0514s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.5e-0982107127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             +kt+ C  f   GtC+ G++C+FaHg+
  SapurV1A.0514s0060.1.p  82 FKTRVCAKFKT-GTCRNGENCNFAHGM 107
                             69*******99.*************95 PP
2zf-CCCH29.61.2e-09146169225
                             -S---SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                             k++lC+ f+ + +C+yGdrC+F H
  SapurV1A.0514s0060.1.p 146 KMKLCKKFYNGEECPYGDRCNFLH 169
                             789*******66************ PP
3zf-CCCH42.51.1e-13231256126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             +kt+lC  +  tG+C++Gd+C+FaHg
  SapurV1A.0514s0060.1.p 231 WKTKLCTKWEITGQCPFGDKCHFAHG 256
                             8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.8E-1577114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-880112IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-681107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.25381108IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-782107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333144172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7144171IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4144171IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-7146169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-9146170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-16226262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-10229261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788230258IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-8230257IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-11231256IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSYPDSHDSF MSPRASYQPG SDAIGVSPQF VMNNNEQFEH HHYQPPYKRP RNSEDNPNQS  60
MNSRPPPTNN IPVQKGPTNI FFKTRVCAKF KTGTCRNGEN CNFAHGMQDL RQPPPNWKEL  120
VGVSGSSEED RSTATNWEDD QRIIHKMKLC KKFYNGEECP YGDRCNFLHE DPSKFREDTG  180
RFRESSAISI GTTGQAMGHV SGVFNAAEVN RPANNAVIDA TRSNIIKPVY WKTKLCTKWE  240
ITGQCPFGDK CHFAHGLAEL QAPGGRTEVE AGNAGSILTK APPPILPNNV YPSMTANMPS  300
LIEEEQSKKS LLKWKGKKKI NRIYADWLDD LPLVHTLTNQ VQS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0514s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313732.20.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT811e-98C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A2K1Z7810.0A0A2K1Z781_POPTR; Uncharacterized protein
STRINGPOPTR_0009s13310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-93C3H family protein