PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0517s0190.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Trihelix

Protein Properties

Length: 337aa MW: 38856.8 Da PI: 9.8815

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0517s0190.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.9	1.3e-23	38	132	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 rWt+qe+ +Lie +r +++r++ ++ +++p+W++vs+++r++g++r+p+qC+++w n+ ++kkik++e+++ ++++s SapurV1A.0517s0190.1.p 38 RWTRQETFVLIESKRAVDNRFQLSRkpasslgsdQIEPKWDSVSSYCRHQGVNRGPVQCRKRWGNMLCDFKKIKTWESQKMNGAESF 124 8*******************654455666667********************************************9999999 PP trihelix 79 cpyfdqle 86 + + ++l+ SapurV1A.0517s0190.1.p 125 WMMRSELR 132 99888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.468	31	104	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.5E-4	33	105	IPR009057	Homeodomain-like
Pfam	PF13837	2.4E-13	37	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MRPESDDRQE TQVLSRPNGV HKEQALDVEN RTKTRNPRWT RQETFVLIES KRAVDNRFQL 60 SRKPASSLGS DQIEPKWDSV SSYCRHQGVN RGPVQCRKRW GNMLCDFKKI KTWESQKMNG 120 AESFWMMRSE LRRERKLPGF FNREVYNVMD GRVITTGEIP MSQITFKKEM GCIDRDEAET 180 AKEGDEGEHE DTKAVFDQRI QFARAEDVLS MDCEKSRLDK IYRSSKKETA ANGNLTKIHA 240 ARFPISSVHV GTTKKQNLGS NTWTGSMSRE RQKKRRLSSD ECRDTNLGDM NMLKSQIQAQ 300 NTNCMLDREQ RKDHNDSLVS ALNKLTDALV KIADKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0517s0190.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216686	1e-106	AC216686.1 Populus trichocarpa clone POP077-C21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024441942.1	1e-157	trihelix transcription factor ASR3
TrEMBL	A0A3N7G0X8	1e-156	A0A3N7G0X8_POPTR; Uncharacterized protein
STRING	POPTR_0015s11710.1	1e-136	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2165	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-70	Trihelix family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0517s0190.1.p