PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0518s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 709aa    MW: 78159.3 Da    PI: 7.1773
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0518s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.3e-24152253199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f k+lt+sd+++ g +++p+ +ae++       ++++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++
  SapurV1A.0518s0120.1.p 152 FAKTLTQSDANNGGGFSVPRYCAETIfprldytSEPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSI 236
                             89****************************986555545..8999****************************************** PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             vF   + +++ l+v+++r+
  SapurV1A.0518s0120.1.p 237 VFL--RAENGDLCVGIRRA 253
                             ***..4488999****997 PP
2Auxin_resp116.22.8e-38305388183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             aa+ a+++++Fe vY+Prast+eF+vk++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  SapurV1A.0518s0120.1.p 305 AASLAANGQPFEAVYYPRASTPEFCVKASAVRSAMQIQWCPGMRFKMAFETEDSSRISWfMGTISSVQVSDPIRWPNSPWRLLQ 388
                             68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-37144256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-30145255IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-22151252No hitNo description
SMARTSM010196.5E-23152254IPR003340B3 DNA binding domain
PfamPF023623.5E-22152253IPR003340B3 DNA binding domain
PROSITE profilePS5086313.38152254IPR003340B3 DNA binding domain
PfamPF065076.1E-33305388IPR010525Auxin response factor
PROSITE profilePS5174517.861622702IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MFDTKLRDCS TQILQIPKLQ GGPMIREFTV MNSQKENMRV AEKCLDSQLW HACAGSMVQM  60
PAVNSKVFYF PQGHAEHAQG SVEFGRFQIP ALIPCKVSAI KYMADPETDE VYAKIRLIPL  120
NNSDLMLGDG CGQDSDDRLH NGTESQEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR  180
LDYTSEPPVQ TILAKDVHGE TWKFRHIYRG TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR  240
AENGDLCVGI RRAKRGIGVG NECSSGWNSF GCYSGFLRED ESKMMTRNGS VDMKGKVKAE  300
SVIEAASLAA NGQPFEAVYY PRASTPEFCV KASAVRSAMQ IQWCPGMRFK MAFETEDSSR  360
ISWFMGTISS VQVSDPIRWP NSPWRLLQVA WDEPDLLHNV KRVSPWLVEL VSNMPAIHLS  420
PFSPPRKKLR LPQPPDFPLF GQIPMPSFTS KPLRSNSPLC CVSDNIPAGI QGARHAQFGL  480
SSSDLHFNKL QAGLFPIDFQ RLDRAAPPSR ISNSNFIGNT QNSESISCLL TMGNSSQSLK  540
ESSDTKTPHI LLFGQLIVTD QQSSQSCSGD TNANSSSDGN PGKANSDGSG SASQQNGLLE  600
NSSDERCPWY KDHQKTDLGL ETGHCKVFME SEDVGRTLDL SVLGSYEELH RKLAKMFGIE  660
SSEMLSNVLY WNAAGATKHA GDEPFSEFLK TARRLTILSD ASSDNVGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-783140937388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0518s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316370.30.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2K1YYK20.0A0A2K1YYK2_POPTR; Auxin response factor
TrEMBLA0A385JIK60.0A0A385JIK6_POPTO; Auxin response factor
STRINGPOPTR_0010s23000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]