PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0523s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 108aa    MW: 12746.5 Da    PI: 11.5024
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0523s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.21.7e-14693186
                            EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83
                            f k l    v +++rl++p   ++++    g+  + + ++ +d++ ++W ++l++r++ +     v+t+ W++Fv+++gL++gD +v+ 
  SapurV1A.0523s0020.1.p  6 FTKLL--RPVDTRHRLTIPMAILRDFefpAGQ--NAINIVATDTTEQQWIFRLSIRRNNNPnprPVFTGQWNRFVEEKGLRAGDRIVIF 90
                            55666..7889999************988555..4568***************994444444579*******************66544 PP

                            E-S CS
                      B3 84 ldg 86
                            +++
  SapurV1A.0523s0020.1.p 91 RQQ 93
                            333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-18396IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.9964107IPR003340B3 DNA binding domain
SuperFamilySSF1019365.23E-15492IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-126107No hitNo description
SMARTSM010190.00356100IPR003340B3 DNA binding domain
PfamPF023621.5E-10693IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MEQHWFTKLL RPVDTRHRLT IPMAILRDFE FPAGQNAINI VATDTTEQQW IFRLSIRRNN  60
NPNPRPVFTG QWNRFVEEKG LRAGDRIVIF RQQAEGDGVQ YRIRVER*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0523s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028527.11e-47PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A2K2AYH57e-49A0A2K2AYH5_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23010.12e-49(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.14e-08B3 family protein