PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0523s0270.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 109aa    MW: 12327.3 Da    PI: 9.5615
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0523s0270.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.87.2e-1214861288
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                      B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88
                            + +rl lp +++e+  ++   +  l+++de+gr W+++++ + ++++   l + W  F++++gL +gD+vv+    ++
  SapurV1A.0523s0270.2.p 14 E-RRLLLPENCLEDLRSD--LESYLKFKDEEGRLWTFRCRASPGGRSkPALYGDWLLFAREKGLGVGDVVVIIS--DK 86
                            3.469*******999766..4448***************775555557999********************983..33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.6982104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-12489IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.004498IPR003340B3 DNA binding domain
CDDcd100177.37E-154102No hitNo description
SuperFamilySSF1019363.27E-12589IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-91587IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MENITKKLNI TDVERRLLLP ENCLEDLRSD LESYLKFKDE EGRLWTFRCR ASPGGRSKPA  60
LYGDWLLFAR EKGLGVGDVV VIISDKEKNI AAGGCFKIKI KRPASKHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0523s0270.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.19e-35PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBLA0A2K2AYG51e-49A0A2K2AYG5_POPTR; B3 family protein
STRINGPOPTR_0004s22930.11e-49(Populus trichocarpa)