PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0524s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Protein Properties

Length: 192aa MW: 21568.3 Da PI: 11.0543

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0524s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.8	3e-11	15	82	14	78
T-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT- CS B3 14 grlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegD 78 +r ++p f+++ g ++ + d sgr+W +++++rkk+++ v+++GW+ Fv+++gLk+ D SapurV1A.0524s0010.1.p 15 KRYSVPTGFLSSLpsfnG---GHAVDFQAVDGSGRVWPFRCSVRKKGRHpkPVISRGWRAFVDSKGLKTDD 82 467999999988886643...346789999**********999999999***************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.2E-11	6	82	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.22E-9	6	82	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.09E-14	6	82	No hit	No description
Pfam	PF02362	1.1E-8	15	82	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MARSSKVLRE TDIKKRYSVP TGFLSSLPSF NGGHAVDFQA VDGSGRVWPF RCSVRKKGRH 60 PKPVISRGWR AFVDSKGLKT DDRGEDAPSR QKKNERRTPR RRKTTMEATL SLPTSEFLTV 120 SLEGQDTLNQ HHHQQNQKCN RFPRPFIHRE LPAPPPHVSM SGGGGAKRGF VGNDSSSFSW 180 RRVDIEIDDC D*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	102	PRRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0524s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213428	5e-62	AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	POPTR_0015s01780.1	4e-78	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2060	7	78

Link Out ? help Back to Top
Phytozome	SapurV1A.0524s0010.1.p