PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0525s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 250aa    MW: 27475.5 Da    PI: 7.5625
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0525s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-183782147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            +g+W++eEd  l ++v+q+G ++W++I+r++  gR++k+c++rw + 
  SapurV1A.0525s0230.1.p 37 KGPWSAEEDRVLTRLVEQHGARNWSLISRYIK-GRSGKSCRLRWCNQ 82
                            79*****************************9.***********985 PP
2Myb_DNA-binding51.13e-1691133347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  SapurV1A.0525s0230.1.p  91 PFSPIEDETILAAHARFGNR-WATIARLLP-GRTDNAVKNHWNST 133
                             79999***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.9273287IPR017930Myb domain
SuperFamilySSF466896.47E-3135130IPR009057Homeodomain-like
SMARTSM007175.2E-163685IPR001005SANT/Myb domain
PfamPF002494.1E-173782IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-243890IPR009057Homeodomain-like
CDDcd001679.94E-153981No hitNo description
SMARTSM007171.7E-1488136IPR001005SANT/Myb domain
PROSITE profilePS5129419.07889138IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2291137IPR009057Homeodomain-like
CDDcd001675.81E-1191134No hitNo description
PfamPF002492.5E-1391133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEAMNMCSTS SSDSSSSDSS FNGNKAPRST IKSERIKGPW SAEEDRVLTR LVEQHGARNW  60
SLISRYIKGR SGKSCRLRWC NQLSPNVEHR PFSPIEDETI LAAHARFGNR WATIARLLPG  120
RTDNAVKNHW NSTLKRRARE RQSQMNLEGN FDSNYGNNNN EGIAIDINVA SGSMSDGIMR  180
EEEDALTTLT LAPPGIGGGV GDNSGGMVVA ERRPEGLPAG FWDVMRDVIA REVRDYVSST  240
LSESTSGFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-39341381105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0525s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374997.11e-148transcription factor MYB77
TrEMBLB9MVK31e-147B9MVK3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s13030.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-57myb domain protein 73