PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0530s0010.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 201aa    MW: 22617.4 Da    PI: 8.3451
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0530s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.3e-06171197430
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                             +h+ +Er RR +iN+++  L++++P +
  SapurV1A.0530s0010.2.p 171 SHSLAERVRRGKINERLRCLQDIVPGC 197
                             8************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.58E-4165199No hitNo description
SuperFamilySSF474591.96E-7165198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.28167200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-7170197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MIEKKQNLMA DFTADLQSFN PPFPFLDIDA SMVAINHFTD VNQAVQLDNP IVNNFHSFTP  60
FTCDNFFSHQ APEFPGSLAE NVLPGSYHQN VMPVSQTLIS PGKESEFQES KKRRAMDVSE  120
SSCMNSSPQV SESGSKKRKS SRRGKRVKNN EEEETKEVVH VRARRGQATD SHSLAERVRR  180
GKINERLRCL QDIVPGCYKV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0530s0010.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374179.21e-115transcription factor BEE 3
TrEMBLA0A2K1XHY71e-113A0A2K1XHY7_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05210.15e-98(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.16e-25BR enhanced expression 3