PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0530s0020.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB

Protein Properties

Length: 323aa MW: 36617.3 Da PI: 7.5587

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0530s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	5.8e-18	27	74	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd llv+++ ++G g+W++ a++ g++Rt+k+c++rw++yl SapurV1A.0530s0020.1.p 27 RGPWTLEEDTLLVHYIGRHGEGRWNLLAKRAGLRRTGKSCRLRWLNYL 74 89********************************************97 PP
2	Myb_DNA-binding	51.9	1.7e-16	80	123	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l++d++ ++G++ W+ Iar+++ gRt++++k++w++ SapurV1A.0530s0020.1.p 80 RGNLTPQEQLLILDLHSKWGNR-WSNIARHLP-GRTDNEIKNYWRT 123 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.954	22	78	IPR017930	Myb domain
SuperFamily	SSF46689	2.81E-30	25	121	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-15	26	76	IPR001005	SANT/Myb domain
Pfam	PF00249	9.0E-17	27	74	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-22	28	81	IPR009057	Homeodomain-like
CDD	cd00167	5.57E-12	29	74	No hit	No description
PROSITE pattern	PS00175	0	42	51	IPR001345	Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profile	PS51294	20.375	79	129	IPR017930	Myb domain
SMART	SM00717	7.9E-15	79	127	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-14	80	123	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-23	82	128	IPR009057	Homeodomain-like
CDD	cd00167	1.01E-11	84	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0003677	Molecular Function	DNA binding
GO:0003824	Molecular Function	catalytic activity

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MRVDTILSSS LKTSMTSSKE DDSELRRGPW TLEEDTLLVH YIGRHGEGRW NLLAKRAGLR 60 RTGKSCRLRW LNYLKPDVKR GNLTPQEQLL ILDLHSKWGN RWSNIARHLP GRTDNEIKNY 120 WRTRVQKQAR HFKIDANSTA FQDIIRCFWM PRLLQKIGGS SAMPSPRPPV SQPNLNYAPQ 180 LSTFPPAQQQ QVPLDMSVTM HCLEPREQTS GSEHGTGSCI SSAESMNASQ MSQISEYPTS 240 PFQAMGNNSE YSTPVKGCYH VDSSCYDMEA INLAAMSVPG ELGILAGDRH MEEGDWGGYD 300 FGDTMWNMDE LWQFRNFQGK EI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-25	24	128	1	104	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0530s0020.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011011974.1	0.0	PREDICTED: myb-related protein Myb4-like
Refseq	XP_011013824.1	0.0	PREDICTED: myb-related protein Myb4-like
TrEMBL	B9IE45	0.0	B9IE45_POPTR; Uncharacterized protein
STRING	POPTR_0015s03770.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1639	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25340.1	4e-80	myb domain protein 116

Link Out ? help Back to Top
Phytozome	SapurV1A.0530s0020.1.p