PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0532s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 176aa    MW: 18887.6 Da    PI: 8.0112
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0532s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.51.3e-39101101100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                             +C aCk+lr+kC+k+C++apyf  +q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq
  SapurV1A.0532s0200.1.p  10 PCGACKFLRKKCVKGCIFAPYFDPDQgTAHFAAVHKVFGASNASKLLLHIPAHKRLDAVVTLCYEALARVRDPVYGCVGHVFTLQQQ 96 
                             7*********************777769*********************************************************** PP

                  DUF260  87 leqlkaelallkee 100
                             + +l+aela ++++
  SapurV1A.0532s0200.1.p  97 VLNLQAELACVQAH 110
                             *********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.8199111IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-3810108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MMGANNGSGP CGACKFLRKK CVKGCIFAPY FDPDQGTAHF AAVHKVFGAS NASKLLLHIP  60
AHKRLDAVVT LCYEALARVR DPVYGCVGHV FTLQQQVLNL QAELACVQAH ISTLQRLSQP  120
PPQCAQSPAQ TTINSSSEVP SFTKLASNPN ISTHFDQLQV QQASTEITGF YDPSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3771047104LOB family transfactor Ramosa2.1
5ly0_B1e-3771047104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0532s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320729.21e-114LOB domain-containing protein 19
SwissprotO813222e-64LBD31_ARATH; LOB domain-containing protein 31
TrEMBLB9IC041e-113B9IC04_POPTR; Uncharacterized protein
STRINGPOPTR_0014s06580.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-62LOB domain-containing protein 31