PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0534s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 382aa    MW: 42728.5 Da    PI: 4.7936
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0534s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.43.3e-37831972117
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             p+G+rF P+++elv +yLk+kv+g +l+  + i +v +y+++P++L +++k+ +e+ewyfF++rdkky++g+r+nra+  gyWkatg
  SapurV1A.0534s0090.1.p  83 PAGYRFCPHNHELVLHYLKNKVNGLPLPR-NRIVDVSLYQHNPEELAEQYKHyGEREWYFFTPRDKKYRNGTRPNRAAGGGYWKATG 168
                             89*************************99.77**************8544443889******************************* PP

                     NAM  88 kdkevlskkgelvglkktLvfykgrapkge 117
                              dk++++ +++ vg +k+Lv+y+g+apk +
  SapurV1A.0534s0090.1.p 169 ADKKIVH-DKAIVGYRKSLVYYNGKAPKVT 197
                             *******.999***************9954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-4481215IPR003441NAC domain
PROSITE profilePS5100535.96382231IPR003441NAC domain
PfamPF023654.9E-1883197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MPCQGEIAFE CPAMEFTEES KANVQVSITT SGVSNSLSKP SPSSSSSVNS SPPSPRLAVR  60
DHLINPDNID GDDDDDNYFD NFPAGYRFCP HNHELVLHYL KNKVNGLPLP RNRIVDVSLY  120
QHNPEELAEQ YKHYGEREWY FFTPRDKKYR NGTRPNRAAG GGYWKATGAD KKIVHDKAIV  180
GYRKSLVYYN GKAPKVTRFF LVQLDDWVLC RIYKKIGRPV KNPEQCSTEK YQLPGGPNDP  240
AAMDGGCSSG TDSLENPWQK QETSPLDGFD DAFLFFNSYS AAQVPILSET YEDPVPMLPS  300
SDFSNGLPEE IWNPPLLQFD LAETFNWYGS TEYFPESITN LPAENLRSSP HPASTGLSAS  360
ETTVETKVPE LPQQLPFVSY V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-388121514168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0534s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025548.10.0PREDICTED: NAC domain-containing protein 102-like
RefseqXP_011032044.10.0PREDICTED: NAC domain-containing protein 102-like
TrEMBLB9HNX80.0B9HNX8_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101121642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-41NAC family protein