PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0534s0150.8.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YA
Protein Properties Length: 202aa    MW: 22436.8 Da    PI: 10.0248
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0534s0150.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.51.4e-303086158
               CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                            ++p+YVNaKQy +I++RR++Rak+e +kkl +k+rkpylheSRh+hA+rR+R+sgGrF
  SapurV1A.0534s0150.8.p 30 QDPVYVNAKQYPGIIRRREQRAKAEVDKKL-IKARKPYLHESRHQHAMRRERSSGGRF 86
                            68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.9E-332889IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.5962989IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.2E-273286IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.6E-223254IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068603454IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.6E-226386IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MMAYGHHPLG YPQFVGMPHA RMLLPLEVAQ DPVYVNAKQY PGIIRRREQR AKAEVDKKLI  60
KARKPYLHES RHQHAMRRER SSGGRFAKKT GDDASKNTSE GKLNGSGPVH ASQSRSSSGS  120
ELLPSDSVET WNSSDGQKEA RESQVHDTFE AHDRVNRGGL YQKHGGLQSS EYGLYLGDNE  180
DGDRPGQQLG NQAKRRSYGP Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-1630103275NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0534s0150.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464106.11e-128nuclear transcription factor Y subunit A-1 isoform X2
RefseqXP_024464107.11e-128nuclear transcription factor Y subunit A-1 isoform X2
SwissprotQ945M93e-49NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A2K1Z3571e-127A0A2K1Z357_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05760.11e-121(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.13e-48nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]