PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0540s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 297aa    MW: 31603.4 Da    PI: 4.5025
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0540s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-1770120155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             + ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  SapurV1A.0540s0020.1.p  70 PVFRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 120
                             579****998.**********854...59**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-1170120IPR001471AP2/ERF domain
SMARTSM003809.1E-3671134IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2171129IPR016177DNA-binding domain
PROSITE profilePS5103222.76171128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-3171129IPR001471AP2/ERF domain
CDDcd000184.08E-3172130No hitNo description
PRINTSPR003671.7E-97283IPR001471AP2/ERF domain
PRINTSPR003671.7E-994110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTVSPVSISN SETGSSSIYS SSLQTPYSPS SSGLSPNPVS KPDPEENQRK PKRPRESGSG  60
SGSGSGSKHP VFRGVRMRTW GKWVSEIREP RKKNRIWLGT FSTPEMAARA HDVAALSIKG  120
KSAILNFPEL AGSLPRPASS SPRDVQDAAA KAASMDFNIV PSAPAKVCDD ENNSNSNSND  180
STASNNNGSS SSLVTQTSSS PSSSSTVEVT SSPSDAATPE ELSEIVELPS LETSFEEFPE  240
FVLSGDSWPY NINQSWYCED YGAEGTGYFS DPFLSIIPES NVITTTGAFE TLLWEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-2161129473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0540s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1514620.0EF151462.1 Populus trichocarpa TINY-like protein 2 (TINYL2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324441.21e-145ethylene-responsive transcription factor ERF043
TrEMBLB9ILS41e-144B9ILS4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s09270.11e-145(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.15e-49ERF family protein