PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0541s0020.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

G2-like

Protein Properties

Length: 204aa MW: 23157 Da PI: 6.2463

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0541s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	84.2	1.4e-26	11	61	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r+rWt+eLH+rF e v+qLGG+++AtP il++m+++gLt++hvkSHLQ SapurV1A.0541s0020.1.p 11 KERMRWTQELHDRFEETVNQLGGPDRATPEGILRAMGIPGLTIYHVKSHLQ 61 68************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.448	8	68	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-24	9	62	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.35E-14	10	62	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-20	11	62	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	13	62	IPR001005	SANT/Myb domain
Pfam	PF14379	8.6E-7	59	85	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MGPSRSDGSN KERMRWTQEL HDRFEETVNQ LGGPDRATPE GILRAMGIPG LTIYHVKSHL 60 QVQKCLKLKI EAQGRFLGRI VEENQNGNPK YTKSSSPVSF PSLCDSESNA MEFETDSEGG 120 KAEIQSEEDF QVLKRLRTEN HVFLPSRYQL EPLNSVPYNQ NMVLQRDSKF SYPSHDGDFA 180 WNILATCSSP LEPSFFQVKY HIM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-19	11	61	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-19	11	61	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-19	11	61	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	11	61	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	11	61	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	11	61	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-19	11	61	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-19	11	61	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-19	11	61	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-19	11	61	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-19	11	61	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-19	11	61	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0541s0020.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006563.1	1e-107	PREDICTED: protein PHR1-LIKE 1-like
Swissprot	Q9SJW0	4e-23	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	B9IGA1	1e-105	B9IGA1_POPTR; Uncharacterized protein
STRING	POPTR_0016s12430.1	1e-106	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10659	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-25	G2-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0541s0020.1.p