PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0542s0170.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 1142aa MW: 123000 Da PI: 4.4254

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0542s0170.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	22	44	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg +F++++ rH r H SapurV1A.0542s0170.2.p 22 YVCNKCGWPFPNPHPSARHRRAH 44 9*******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.037	22	44	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	24	44	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1142 aa Download sequence Send to blast
MDSQDPRKNP SHTPGHESHG VYVCNKCGWP FPNPHPSARH RRAHRKICGT LKGYKFVDSE 60 ETPLSALSDD DRGSDEDPKT PSPKGLGRGI NEKGSGGVGN RSNRSEDDVF TDAIAEFPES 120 GSSSVTGEHT KDVKEPEINL EVNKATDQSS KDGSITVISP PPSNSADHIQ MQSTEVPVIN 180 LSESPQESLD HDLNATIASM SRTLTDCRGE QSGFEHSHDN RSSARDPIPI KLETQTDASQ 240 EKKSVSVEDL PKTDAKGNEE TKSEGQLLDV VDSTNDNAKD VSEVASKSQK MEDVTSQPVP 300 AAEVPQLKEG GYTDDLASGM SFNDHSPEVK SVEPAHSSIS TAQIKGGAPQ EIDSAVYANS 360 TVTCDNKGEG NENVHVLVVP NDITVVSDAE NMVKGFKDLE GGKLPKLMNV DSFDVFNNVK 420 DSDLKNNPQV LNSRSLTEDT EASASDMHVL IDNLEPKDGT SQHIVEELLD EAEADVPQIS 480 EVSVTDVVTG DLEKSISVHS PEENVPRDHC DTSSLTSSIE HATKVVPHTN TVVVPSDAEV 540 RQTKLVGMDG TGNDEKDKIE SSEIGVKDNF AENTIPSFKH VSIPSEQADQ RNSLIGDVKA 600 TGLEEGKIER CNVSEIVTEG DSVSGLGEEN LLREPNSTLE SAVNVESRFT SENEINVCEA 660 NLPQHASIPS EQADQRNRLH GDVKAAGLEE GKIERRNVSE IVTEGDSLSG LGEENLLRKT 720 KTIPESAVNV ESRFTSENEI NVCEATLPQH ASIPSDQADQ RNRLHGDVIA AGLEEGKIER 780 CNVSEIVTEG DSVSGLGEEN LLRKPKTTPE SAVNVESRFT SENEINVCEV KLPHHEHTDI 840 GRVLDPQESR KETESNGMAN QEAEHAGEDS TAAESDSGGG DVEVLRKSSE EKMVVASATD 900 FSADSISQTD SLEGHWGSVS VLSTQSDIPA ILDAEPLPSN GSRASEAEAT LKKPIAASET 960 EHADKSDIFD PPSVTALIEP RDVVNQKAAA SEIQTTWNPQ QPRAASVQAG LSPSITDVSN 1020 ELQGRKKQEE IMAKVTDWST GKQHTPLKNL LGEASMETRS KSLNAKEIPV EKDGPAAKDN 1080 GSLPKTVSSI LAPQAPEGEP AKLEEKAWSS PARYPADIKR EKRRVRGRPY WAQFVCCSSV 1140 N*

Sequence ? help Back to Top

Protein Sequence Length: 1142 aa Download sequence Send to blast

MDSQDPRKNP SHTPGHESHG VYVCNKCGWP FPNPHPSARH RRAHRKICGT LKGYKFVDSE  60
ETPLSALSDD DRGSDEDPKT PSPKGLGRGI NEKGSGGVGN RSNRSEDDVF TDAIAEFPES  120
GSSSVTGEHT KDVKEPEINL EVNKATDQSS KDGSITVISP PPSNSADHIQ MQSTEVPVIN  180
LSESPQESLD HDLNATIASM SRTLTDCRGE QSGFEHSHDN RSSARDPIPI KLETQTDASQ  240
EKKSVSVEDL PKTDAKGNEE TKSEGQLLDV VDSTNDNAKD VSEVASKSQK MEDVTSQPVP  300
AAEVPQLKEG GYTDDLASGM SFNDHSPEVK SVEPAHSSIS TAQIKGGAPQ EIDSAVYANS  360
TVTCDNKGEG NENVHVLVVP NDITVVSDAE NMVKGFKDLE GGKLPKLMNV DSFDVFNNVK  420
DSDLKNNPQV LNSRSLTEDT EASASDMHVL IDNLEPKDGT SQHIVEELLD EAEADVPQIS  480
EVSVTDVVTG DLEKSISVHS PEENVPRDHC DTSSLTSSIE HATKVVPHTN TVVVPSDAEV  540
RQTKLVGMDG TGNDEKDKIE SSEIGVKDNF AENTIPSFKH VSIPSEQADQ RNSLIGDVKA  600
TGLEEGKIER CNVSEIVTEG DSVSGLGEEN LLREPNSTLE SAVNVESRFT SENEINVCEA  660
NLPQHASIPS EQADQRNRLH GDVKAAGLEE GKIERRNVSE IVTEGDSLSG LGEENLLRKT  720
KTIPESAVNV ESRFTSENEI NVCEATLPQH ASIPSDQADQ RNRLHGDVIA AGLEEGKIER  780
CNVSEIVTEG DSVSGLGEEN LLRKPKTTPE SAVNVESRFT SENEINVCEV KLPHHEHTDI  840
GRVLDPQESR KETESNGMAN QEAEHAGEDS TAAESDSGGG DVEVLRKSSE EKMVVASATD  900
FSADSISQTD SLEGHWGSVS VLSTQSDIPA ILDAEPLPSN GSRASEAEAT LKKPIAASET  960
EHADKSDIFD PPSVTALIEP RDVVNQKAAA SEIQTTWNPQ QPRAASVQAG LSPSITDVSN  1020
ELQGRKKQEE IMAKVTDWST GKQHTPLKNL LGEASMETRS KSLNAKEIPV EKDGPAAKDN  1080
GSLPKTVSSI LAPQAPEGEP AKLEEKAWSS PARYPADIKR EKRRVRGRPY WAQFVCCSSV  1140
N*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0542s0170.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214097	1e-36	AC214097.1 Populus trichocarpa clone POP027-H14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024440950.1	0.0	uncharacterized protein LOC18105314 isoform X1
TrEMBL	A0A2I4KKX1	0.0	A0A2I4KKX1_POPTR; C2H2 family protein
STRING	POPTR_0014s14320.1	0.0	(Populus trichocarpa)

Link Out ? help Back to Top
Phytozome	SapurV1A.0542s0170.2.p