PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0550s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 255aa    MW: 28836.6 Da    PI: 7.6661
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0550s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-09123163954
                             HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              r RR+ri +++  L++l+P       +K++ a+iL +A++Y+k L
  SapurV1A.0550s0030.1.p 123 ARLRRERISEKIRILQRLVPGG-----RKMDTASILDEAIRYVKFL 163
                             699*****************96.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.142114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-13119179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14119180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-12120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-10120168No hitNo description
PfamPF000101.9E-6124163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MNINQTESTN HISNLRMSME DQVLHHGRLP FDSICPSYPL QLQQAPVPAS NQITPPTFHS  60
HNQIGNNTDE ADQDEPEEEL GAMKEMMYRI AAMQPVDIDL ATIDHKPRRK NVRISDDPQS  120
VAARLRRERI SEKIRILQRL VPGGRKMDTA SILDEAIRYV KFLKRQIRLL QPNHQHQHQP  180
CNTNEDRQIP CNNKPLNSTT TTTATSSSLE PRAALVGYLL GGHGDNPLCF NHEVARILLT  240
KGGYIYGLWN NHNC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110KPRRKN
2123128RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0550s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022970.11e-132PREDICTED: transcription factor HEC3-like
TrEMBLA0A3N7FH511e-131A0A3N7FH51_POPTR; Uncharacterized protein
STRINGPOPTR_0005s06220.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.19e-44bHLH family protein