PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0552s0020.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

ZF-HD

Protein Properties

Length: 139aa MW: 15182.8 Da PI: 7.6831

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0552s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.3	7.5e-33	63	119	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +v+Y eClkNhAa +Gg+avDGC+Efm+s gee+ta +l+CaACgCHRnFHRreve+e SapurV1A.0552s0020.1.p 63 NVKYGECLKNHAAGVGGYAVDGCREFMAS-GEESTAGSLTCAACGCHRNFHRREVETE 119 79************************9.999*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-26	63	129	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.2E-30	63	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.8E-27	65	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.872	66	115	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MPASNYRPVF QLESSSPVYQ GFERREGSVE LGTRKMRKRQ VVVRRSEEPS RSSTTSSSFT 60 ISNVKYGECL KNHAAGVGGY AVDGCREFMA SGEESTAGSL TCAACGCHRN FHRREVETEI 120 VCDCSSPSSN GNYNFDQC*

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269\|PubMed:21455630}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0552s0020.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002306048.1	1e-79	mini zinc finger protein 2
Swissprot	Q9LJW5	3e-41	MIF2_ARATH; Mini zinc finger protein 2
TrEMBL	B9H0F7	3e-78	B9H0F7_POPTR; ZF-HD family protein
STRING	POPTR_0004s12510.1	5e-79	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1550	34	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	2e-37	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	SapurV1A.0552s0020.1.p

Publications ? help Back to Top
Bollier N, et al. At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 2018. 30(1): p. 83-100 [PMID:29298836]