PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0555s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 373aa    MW: 39860.7 Da    PI: 7.1533
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0555s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-0891116127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             +kt+lC+ f++ GtC+y  +C+FaH++
  SapurV1A.0555s0090.1.p  91 FKTKLCCKFRA-GTCPYITNCNFAHSM 116
                             69*********.*************95 PP
2zf-CCCH18.53.6e-06163188126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             yk + C+ f+    C+yGd+C+F H+
  SapurV1A.0555s0090.1.p 163 YKGRHCKKFYTEEGCPYGDNCTFLHD 188
                             77888********************7 PP
3zf-CCCH41.71.9e-13255280126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             +kt++C+ +  tG+C++G++C+FaHg
  SapurV1A.0555s0090.1.p 255 WKTRICNKWELTGYCPFGNKCHFAHG 280
                             8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.22E-788121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-1388123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.62490117IPR000571Zinc finger, CCCH-type
SMARTSM003560.001590116IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-591115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-9160190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-7161190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23162190IPR000571Zinc finger, CCCH-type
SMARTSM003560.058162189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-17250284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-10251285IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-9254281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981254282IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10255280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDYNRDFSGG NVISITGPDS WVSNSSDSNS VWATEDDYRF WNNSDVLNDN TLSNSNYQSS  60
ETRSGSEPPN KKSKNNSQEL NSKKSIGKMF FKTKLCCKFR AGTCPYITNC NFAHSMEELR  120
RPPPNWQEIV AAHEEEKGNT VDAREEFQIP SIVGFGAETQ RSYKGRHCKK FYTEEGCPYG  180
DNCTFLHDEQ SKNRESVAIS LGPGGYGGGG GGGGGGGGGG GGGGGGGGGG GAVAVAGSGG  240
GNTGSNAVNV KPSNWKTRIC NKWELTGYCP FGNKCHFAHG AGELHRYGGG LVDMDAKDSA  300
FFPVESKQGG VPSKTPPETV VTSVTSVPNS DVYVQSQKSS ILIQRPGQRT HQKWKGPDKI  360
SRIYGDWIDD IE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0555s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368387.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-124C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLU5GRB70.0U5GRB7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s02330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-114C3H family protein