PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0557s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 188aa    MW: 20804.3 Da    PI: 7.2646
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0557s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.92.3e-1213421241
                            HHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                  SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifs 41
                            ++ kR+++i KKA EL +LCd+ v+vi+  
  SapurV1A.0557s0180.1.p 13 SYRKRQATIEKKATELAILCDVPVCVIVKD 42
                            899************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.61140IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-11474IPR002100Transcription factor, MADS-box
PfamPF003192.6E-101248IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MTPVTGNKGQ EKSYRKRQAT IEKKATELAI LCDVPVCVIV KDNTDGRVST VPQDRGQVVD  60
ILLSYKRRLQ AELVAGNANS RAEKQDETWE PSFNNLPDEN LMEFMKELEE KSEMVDEAIK  120
RKEEITSKEK KGKGKRIHDE SSKFGNKKAK GIVLDSKTNT SSSSADSDGI VLDSKTTNSS  180
SSAYSDGI
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0557s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316181.22e-89uncharacterized protein LOC7474401
TrEMBLA0A2K1YW435e-88A0A2K1YW43_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18860.12e-89(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2828733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65330.19e-09AGAMOUS-like 78