PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0560s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 183aa    MW: 21280.2 Da    PI: 10.0521
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0560s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.8e-1162173293
                             EEE-..-HHHHTT-EE--HHH.HTT.................---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTH.HHHH CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeeh.................ggkkeesktltled.esgrsWevkliyrkksgryvltkGW.keFv 69 
                             +k+++psd ++++rl +p   +e+h                 +++++++ ++++ d  +g + ++ +  + +s++y++ +GW k+Fv
  SapurV1A.0560s0050.1.p  62 KKKMKPSDLGNLCRLLVPSYLVEKHilpflnttqanqvagvvSQETNRGLKVRVWDmNTGSTHQLVFERWSTSRSYIFNDGWtKDFV 148
                             699*************************99999888887777555567778888887778888888888*************557** PP

                             HHHT--TT-EEEEEE-SS.SEE..E CS
                      B3  70 kangLkegDfvvFkldgr.sefelv 93 
                             k  +L egD + ++ d++ s+f++ 
  SapurV1A.0560s0050.1.p 149 KRRNLAEGDEIGIYWDKDqSRFTFS 173
                             **************99877777443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-1859171IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1659173IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-1659174No hitNo description
SMARTSM010190.004761176IPR003340B3 DNA binding domain
PfamPF023625.2E-863173IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEKHGWIQSR NKESVEELDR SRVTFNLRRM TTSYTMGDLL EERSRGVSTE LSLSHYHPFT  60
IKKKMKPSDL GNLCRLLVPS YLVEKHILPF LNTTQANQVA GVVSQETNRG LKVRVWDMNT  120
GSTHQLVFER WSTSRSYIFN DGWTKDFVKR RNLAEGDEIG IYWDKDQSRF TFSVPSRTCL  180
VR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0560s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035168.14e-94PREDICTED: B3 domain-containing protein At2g33720-like
TrEMBLB9H2Z84e-92B9H2Z8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s09870.16e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF5791221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.11e-26B3 family protein